You spend the LT order in the same way as a normal NCO profile. The only way to give away her LT status is for it to be the only legal profile in the list or for your opponent to pick up on a 2-point saving, or think your SWC being low is weird.
EDIT. Hold on that's exactly how it was before. You still can't have Kusanagi, Healer, Custodier. It's not a Moira link because there is no Moira in it. It can't be a Healer or Custodier link, because they can't join each others links. God knows why you'd want Kusanagi + 2 Healers or even Kusanagi + 2 Custodiers. I guess you could Wildcard in a REM, but it still begs the question why is 2 different Reverends and a REM OK, but not 3 different types of Reverends inc Kusanagi? The latter is why more thematic.
I really like the cyberpunk vibe of Bakunin but those religious Obervance Extremists somehow did not fit to me. So I never played them. And without Observance all my tries at lists were lacking something. With the N4 I will try a camo-list in the next game with something like Zoe & PiWell Moderator + RiotGrrl/Tsyklon/Vostok Core 3 Zeros (at least one minelayer) 1-2 Prowlers Reaktion Zond 1-2 Morlocks (Assault Pistol price reduction is great) Bran do Castro/Uberfallkommando